Bookkeeping for Ecommerce – Brisbane.

Xero Bookkeeping for Shopify, Amazon, WooCommerce & More.

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Comprehensive Bookkeeping for Ecommerce Sellers.

We provide professional bookkeeping services tailored specifically for ecommerce businesses. Our team understands the operational complexities of selling online—multi-channel sales, platform fees, payment gateways, inventory costs—and delivers accurate, compliant bookkeeping that supports informed decision-making.



We work exclusively with Xero and support ecommerce businesses using Shopify, Amazon, WooCommerce, Etsy, eBay and more. Whether you operate a single storefront or manage multiple sales channels, we ensure your books are accurate, compliant, and structured for scale.

Bank Reconciliations.

Shopify, Stripe, PayPal, and Afterpay reconciliations.

BAS & GST Lodgement.

BAS and GST lodgements by registered BAS agents.

Payroll, STP Super.

Payroll, STP and Superannuation compliance.

Xero Set-Up & Support.

New files, clean-ups, migrations and training.

Catch-Up Bookkeeping.

Get your books up to date. We can help you get back on track, fast.

Financial Reporting.

Monthly management reports and financial performance summaries.


Why Ecommerce Requires a Specialist Approach.

Ecommerce bookkeeping involves more than basic reconciliations. Without the right systems in place, business owners risk:

  • Misreporting income due to split payment timelines (e.g. Stripe or PayPal holds)
  • Inaccurate cost of goods sold and poor margin visibility
  • Delays in BAS preparation due to unreconciled platform data
  • Overlooked tax compliance across multiple jurisdictions
  • We resolve these issues with a bookkeeping process designed specifically for online business models.

Why Bookkeeper Connect?

Award-Winning Expertise

Led by Tracey Rubens, one of Australia’s most recognised small business bookkeepers.

Ecommerce Specialists

Proven systems for reconciling Stripe, PayPal, Afterpay and other platforms.

Cloud-Based, Xero-Certified 

We're experts in Xero – from set-up to ongoing support we are here for you.

Local Support, Australia-Wide

Australian-based team with BAS agent registration.

ecommerce bookkeeping services in brisbane

Online Sellers We Support.

We work with Australian ecommerce businesses in the $80,000 to $5M revenue range, including:

  • Shopify and Shopify Plus stores
  • Amazon FBA and FBM businesses
  • WooCommerce and BigCommerce merchants
  • Multi-channel brands operating across eBay, Etsy, and more
  • Direct-to-consumer brands scaling nationally or globally
  • We serve clients locally in Brisbane and remotely across Australia.

Kind Words From Our Clients.

Some Questions You May Have.

Don’t sweat it if you’ve got more questions – that’s what we’re here for! 

Contact Us
  • What is ecommerce bookkeeping and how is it different from regular bookkeeping?

    Ecommerce bookkeeping involves managing the financial records of online businesses, including reconciling sales from platforms like Shopify, Amazon, and WooCommerce. It also accounts for merchant fees (e.g. Stripe, PayPal, Afterpay), inventory, and multi-channel sales—making it more complex than traditional small business bookkeeping.

  • Do I need a Xero bookkeeper for my Shopify or WooCommerce store?

    Yes. If you run an ecommerce business using Xero, it’s essential to work with a bookkeeper who understands both the platform and ecommerce workflows. We ensure your sales, fees, and payouts are accurately recorded and reconciled in Xero for reliable BAS, GST and financial reporting.

  • Can you reconcile Stripe, PayPal and Afterpay transactions in Xero?

    Absolutely. These platforms split payments and deduct fees differently. We specialise in reconciling Stripe, PayPal, Afterpay, and other payment gateways in Xero to give you accurate financial records and a true view of your revenue.

  • Do you offer BAS and GST services for ecommerce businesses?

    Yes, we are registered BAS agents and provide full BAS preparation and lodgement services for ecommerce businesses. We ensure your GST is calculated correctly across different platforms and product types, and submitted on time.

  • Can you help clean up or fix my existing Xero file for an ecommerce business?

    Yes. If your Xero file has unreconciled transactions, misclassified income, or messy platform data, we offer one-off ecommerce Xero clean-up services to get your books back in order before transitioning to ongoing support.